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Journal Article (Refereed)
January 2006

A First Step towards Learning which uORFs Regulate Gene Expression

Selpi & Bryant, C & Kemp, G & Cvijovic, M 2006, 'A First Step towards Learning which uORFs Regulate Gene Expression', Journal of Integrative Bioinformatics, 3(2), p.31.

Abstract

We have taken a first step towards learning which upstream Open Reading Frames (uORFs) regulate gene expression (i.e., which uORFs are functional) in the yeast Saccharomyces cerevisiae. We do this by integrating data from several resources and combining a bioinformatics tool,ORF Finder, with a machine learning technique, Inductive Logic Programming (ILP). Here, we report the challenge of using ILP as part of this integrative system, in order to automatically generate a model that identifies functional uORFs. Our method makes searching for novel functional uORFs more efficient than random sampling. An attempt has been made to predict novel functional uORFs using our method. Some preliminary evidence that our model may be biologically meaningful is presented.

Notes

 ISSN = 1613-4516

Authors

SEEK Members

External Authors

G.J.L. Kemp

M. Cvijovic

Selpi

Publication Details

Journal Name
Journal of Integrative Bioinformatics

Volume
3(2)

Pagination
31.